PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g005630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 275aa    MW: 30315.9 Da    PI: 6.638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g005630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32e-064892553
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                    + erE+ RRd++++ f eL   l ++     +K +K++ L+ +++ +k+
  Csa11g005630.1 48 KAEREKLRRDKLKEQFLELGNALDPN----RPKSDKVSLLTDTIQMLKD 92
                    589********************997....79************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-1242114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.9634393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-1048114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-54999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDQSKKPKAC SESDSSVSSS SSSSTSGHNL RAEMVVVEVN KEAVCSRKAE REKLRRDKLK  60
EQFLELGNAL DPNRPKSDKV SLLTDTIQML KDVMSQVERL KAEYATLSQE SHELIQEKTE  120
LREEKATLKS DIEILNAQYQ HRVRSMVPWI PHYTYPIPVV AITQDQSTFI PYSASVVNPL  180
IEQVPLQKHS SSSSGASSKQ NSKSKSLDQD NDHKYDVGLE LELKIHASSL AQQDVSGKEK  240
KESLTPTAIS SNSYSSSQAV QDSPPGGVND ILKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437385.10.0PREDICTED: transcription factor bHLH11-like isoform X1
SwissprotQ8W2F21e-134BH011_ARATH; Transcription factor bHLH11
TrEMBLR0H1A01e-143R0H1A0_9BRAS; Uncharacterized protein
STRINGAT4G36060.11e-132(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.11e-121bHLH family protein